No. words: 1843; after pruning: 1796


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.6 (1,1:886)  869  0.34 0.00 0.23  KSU041_E11_BM138178Ld05P009C06C121F2_087.ab1        1   888 (18)  C KSU042_E11_BM138178Ld05P009C06C121R2_087.ab1   (51)   886     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  436 nodes

 220 str. conn. components

Path
    1  C KSU042_E11_BM138178Ld05P009C06C121R2_087.ab1   937 
   59    KSU041_E11_BM138178Ld05P009C06C121F2_087.ab1     8 
   75  C KSU042_E11_BM138178Ld05P009C06C121R2_087.ab1   863 
   79    KSU041_E11_BM138178Ld05P009C06C121F2_087.ab1    28 
  451  C KSU042_E11_BM138178Ld05P009C06C121R2_087.ab1   487 
  923    KSU041_E11_BM138178Ld05P009C06C121F2_087.ab1   872 
Contig length: old 956, new 957

Contig length: old 957, new 957
New start: 0