No. words: 1891; after pruning: 1837


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:881)  846  0.57 0.11 0.45  KSU041_F11_BM138178Ld06P009C06C121F2_085.ab1        1   884 (59)  C KSU042_F11_BM138178Ld06P009C06C121R2_085.ab1   (67)   881     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  422 nodes

 213 str. conn. components

Path
    1  C KSU042_F11_BM138178Ld06P009C06C121R2_085.ab1   948 
   79    KSU041_F11_BM138178Ld06P009C06C121F2_085.ab1    12 
  307  C KSU042_F11_BM138178Ld06P009C06C121R2_085.ab1   642 
  331    KSU041_F11_BM138178Ld06P009C06C121F2_085.ab1   264 
  347  C KSU042_F11_BM138178Ld06P009C06C121R2_085.ab1   602 
  930    KSU041_F11_BM138178Ld06P009C06C121F2_085.ab1   865 
Contig length: old 1009, new 1008

Contig length: old 1008, new 1009
New start: 0 
S Change at: 73; seg lengths: entry 2, contig 2
I Change at: 911; seg lengths: entry 1, contig 0