No. words: 1200; after pruning: 1160


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:560)  552  0.18 0.00 0.00  KSU002_F04_BM138642At01P006H06H121F1_031.ab1        1   561 (56)  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   (22)   561     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   583 
   38    KSU002_F04_BM138642At01P006H06H121F1_031.ab1    16 
   42  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   542 
   54    KSU002_F04_BM138642At01P006H06H121F1_031.ab1    32 
   58  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   526 
   62    KSU002_F04_BM138642At01P006H06H121F1_031.ab1    40 
   66  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   518 
   70    KSU002_F04_BM138642At01P006H06H121F1_031.ab1    48 
  342  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   242 
  346    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   324 
  390  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   194 
  402    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   380 
  406  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   178 
  414    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   392 
  422  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1   162 
  426    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   404 
  498  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1    86 
  542    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   520 
  554  C KSU003_F04_BM138642At01P006H06H121R1_031.ab1    30 
  570    KSU002_F04_BM138642At01P006H06H121F1_031.ab1   548 
Contig length: old 639, new 639

Contig length: old 639, new 639
New start: 0