No. words: 1440; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:569)  492  3.33 0.18 0.18  KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1        1   570 (213)  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   (87)   570     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   657 
   91    KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1     4 
   95  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   563 
   99    KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1    12 
  139  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   519 
  143    KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1    56 
  188  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   469 
  192    KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1   105 
  196  C KSU046_F10_BM138642Ld08P006H06H121R2_070.ab1   461 
  205    KSU045_F10_BM138642Ld08P006H06H121F2_070.ab1   119 
Contig length: old 870, new 869

Contig length: old 869, new 869
New start: 0 
S Change at: 678; seg lengths: entry 1, contig 1
S Change at: 752; seg lengths: entry 1, contig 1