No. words: 1485; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:614)  576  1.30 0.16 0.00  KSU045_C11_BM138642Ld15P006H06H121F2_091.ab1        1   614 (132)  C KSU046_C11_BM138642Ld15P006H06H121R2_091.ab1   (124)   615     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C KSU046_C11_BM138642Ld15P006H06H121R2_091.ab1   739 
  128    KSU045_C11_BM138642Ld15P006H06H121F2_091.ab1     4 
  284  C KSU046_C11_BM138642Ld15P006H06H121R2_091.ab1   456 
  288    KSU045_C11_BM138642Ld15P006H06H121F2_091.ab1   164 
Contig length: old 870, new 870

Contig length: old 870, new 870
New start: 0 
S Change at: 713; seg lengths: entry 1, contig 1