No. words: 1348; after pruning: 1308


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:646)  631  0.15 0.00 0.15  KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1        1   647 (30)  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   (25)   646     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   671 
   29    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1     4 
  393  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   279 
  401    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   376 
  421  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   251 
  429    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   404 
  441  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   231 
  449    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   424 
  457  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   215 
  461    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   436 
  465  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   207 
  469    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   444 
  473  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   199 
  477    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   452 
  481  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   191 
  485    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   460 
  493  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   179 
  501    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   476 
  553  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1   119 
  613    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   588 
  617  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1    55 
  638    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   613 
  646  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1    26 
  654    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   629 
  658  C KSU007_A05_BM138642Tu02P006H06H121R1_033.ab1    14 
  662    KSU006_A05_BM138642Tu02P006H06H121F1_033.ab1   637 
Contig length: old 701, new 702

Contig length: old 702, new 702
New start: 0