No. words: 1027; after pruning: 1001


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 5.6 (1,1:349)  334  0.00 0.00 0.29  KSU043_E10_BQ160019Ld05P009D06D121F2_072.ab1        1   349 (181)  C KSU044_E10_BQ160019Ld05P009D06D121R2_072.ab1   (148)   349     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C KSU044_E10_BQ160019Ld05P009D06D121R2_072.ab1   497 
  380    KSU043_E10_BQ160019Ld05P009D06D121F2_072.ab1   232 
Contig length: old 677, new 678

Contig length: old 678, new 678
New start: 0