No. words: 584; after pruning: 558


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   18    0.0 3.0 (1,1:258)  221  1.67 0.42 0.00  KSU008_G10_BQ162030At01P009E06E121F1_072.ab1        1   240 (36)  C KSU009_G10_BQ162030At01P009E06E121R1_072.ab1   (49)   259    19 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
18       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C KSU009_G10_BQ162030At01P009E06E121R1_072.ab1   308 
   60    KSU008_G10_BQ162030At01P009E06E121F1_072.ab1    11 
   72  C KSU009_G10_BQ162030At01P009E06E121R1_072.ab1   237 
   92    KSU008_G10_BQ162030At01P009E06E121F1_072.ab1    43 
   96  C KSU009_G10_BQ162030At01P009E06E121R1_072.ab1   213 
  108    KSU008_G10_BQ162030At01P009E06E121F1_072.ab1    59 
  148  C KSU009_G10_BQ162030At01P009E06E121R1_072.ab1   161 
  156    KSU008_G10_BQ162030At01P009E06E121F1_072.ab1   107 
Contig length: old 325, new 325

Contig length: old 325, new 325
New start: 0