No. words: 807; after pruning: 781


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:242)  236  0.41 0.00 0.00  KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1        1   243 (173)  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   (148)   243     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   391 
  191    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1    43 
  199  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   193 
  207    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1    59 
  211  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   181 
  219    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1    71 
  227  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   165 
  231    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1    83 
  235  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   157 
  239    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1    91 
  247  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   145 
  251    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1   103 
  271  C KSU044_A02_BQ162030Ld09P009E06E121R2_016.ab1   121 
  275    KSU043_A02_BQ162030Ld09P009E06E121F2_016.ab1   127 
Contig length: old 564, new 564

Contig length: old 564, new 564
New start: 0 
S Change at: 167; seg lengths: entry 1, contig 1