No. words: 1127; after pruning: 1101


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.1 (1,1:226)  205  2.64 0.00 0.00  KSU043_B02_BQ162030Ld10P009E06E121F2_014.ab1        1   227 (191)  C KSU044_B02_BQ162030Ld10P009E06E121R2_014.ab1   (482)   227     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1  C KSU044_B02_BQ162030Ld10P009E06E121R2_014.ab1   709 
  486    KSU043_B02_BQ162030Ld10P009E06E121F2_014.ab1     4 
Contig length: old 900, new 900

Contig length: old 900, new 900
New start: 0