No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.2 (1,1:238)  231  0.00 0.00 0.42  KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1        1   239 (188)  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   (352)   238     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   590 
  380    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    28 
  388  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   203 
  392    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    40 
  396  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   195 
  400    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    48 
  404  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   187 
  408    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    56 
  420  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   171 
  424    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    72 
  432  C KSU044_G02_BQ162030Ld15P009E06E121R2_004.ab1   159 
  444    KSU043_G02_BQ162030Ld15P009E06E121F2_004.ab1    92 
Contig length: old 778, new 779

Contig length: old 779, new 779
New start: 0