No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:399)  383  1.00 0.00 0.00  KSU043_B03_BQ168911Ld02P009F06F121F2_029.ab1        1   400 (151)  C KSU044_B03_BQ168911Ld02P009F06F121R2_029.ab1   (186)   400     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C KSU044_B03_BQ168911Ld02P009F06F121R2_029.ab1   586 
  218    KSU043_B03_BQ168911Ld02P009F06F121F2_029.ab1    32 
  226  C KSU044_B03_BQ168911Ld02P009F06F121R2_029.ab1   361 
  246    KSU043_B03_BQ168911Ld02P009F06F121F2_029.ab1    60 
  274  C KSU044_B03_BQ168911Ld02P009F06F121R2_029.ab1   313 
  322    KSU043_B03_BQ168911Ld02P009F06F121F2_029.ab1   136 
Contig length: old 737, new 737

Contig length: old 737, new 737
New start: 0