No. words: 1135; after pruning: 1109


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:409)  401  0.00 0.00 0.24  KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1        1   410 (168)  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   (148)   409     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   557 
  232    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1    84 
  236  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   322 
  252    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   104 
  272  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   286 
  320    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   172 
  340  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   218 
  352    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   204 
  396  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   162 
  424    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   276 
  440  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1   118 
  448    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   300 
  508  C KSU044_E03_BQ168911Ld05P009F06F121R2_023.ab1    50 
  512    KSU043_E03_BQ168911Ld05P009F06F121F2_023.ab1   364 
Contig length: old 725, new 726

Contig length: old 726, new 726
New start: 0