No. words: 1174; after pruning: 1148


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.8 (1,1:431)  415  0.00 0.00 0.47  KSU043_G03_BQ168911Ld07P009F06F121F2_019.ab1        1   430 (138)  C KSU044_G03_BQ168911Ld07P009F06F121R2_019.ab1   (175)   431     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C KSU044_G03_BQ168911Ld07P009F06F121R2_019.ab1   606 
  475    KSU043_G03_BQ168911Ld07P009F06F121F2_019.ab1   300 
Contig length: old 742, new 743

Contig length: old 743, new 743
New start: 0