No. words: 1133; after pruning: 1107


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:408)  399  0.00 0.00 0.24  KSU043_A04_BQ168911Ld09P009F06F121F2_032.ab1        1   409 (168)  C KSU044_A04_BQ168911Ld09P009F06F121R2_032.ab1   (148)   408     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C KSU044_A04_BQ168911Ld09P009F06F121R2_032.ab1   556 
  248    KSU043_A04_BQ168911Ld09P009F06F121F2_032.ab1   100 
  252  C KSU044_A04_BQ168911Ld09P009F06F121R2_032.ab1   305 
  268    KSU043_A04_BQ168911Ld09P009F06F121F2_032.ab1   120 
  272  C KSU044_A04_BQ168911Ld09P009F06F121R2_032.ab1   285 
  312    KSU043_A04_BQ168911Ld09P009F06F121F2_032.ab1   164 
  340  C KSU044_A04_BQ168911Ld09P009F06F121R2_032.ab1   217 
  344    KSU043_A04_BQ168911Ld09P009F06F121F2_032.ab1   196 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0