No. words: 1082; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:398)  394  0.00 0.00 0.00  KSU043_B04_BQ168911Ld10P009F06F121F2_030.ab1        1   399 (138)  C KSU044_B04_BQ168911Ld10P009F06F121R2_030.ab1   (146)   399     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C KSU044_B04_BQ168911Ld10P009F06F121R2_030.ab1   545 
  350    KSU043_B04_BQ168911Ld10P009F06F121F2_030.ab1   204 
  378  C KSU044_B04_BQ168911Ld10P009F06F121R2_030.ab1   168 
  430    KSU043_B04_BQ168911Ld10P009F06F121F2_030.ab1   284 
  498  C KSU044_B04_BQ168911Ld10P009F06F121R2_030.ab1    48 
  502    KSU043_B04_BQ168911Ld10P009F06F121F2_030.ab1   356 
Contig length: old 683, new 683

Contig length: old 683, new 683
New start: 0