No. words: 1123; after pruning: 1097


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:398)  389  0.00 0.00 0.25  KSU043_C04_BQ168911Ld11P009F06F121F2_028.ab1        1   399 (176)  C KSU044_C04_BQ168911Ld11P009F06F121R2_028.ab1   (150)   398     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C KSU044_C04_BQ168911Ld11P009F06F121R2_028.ab1   548 
  350    KSU043_C04_BQ168911Ld11P009F06F121F2_028.ab1   200 
  394  C KSU044_C04_BQ168911Ld11P009F06F121R2_028.ab1   155 
  426    KSU043_C04_BQ168911Ld11P009F06F121F2_028.ab1   276 
  522  C KSU044_C04_BQ168911Ld11P009F06F121R2_028.ab1    27 
  526    KSU043_C04_BQ168911Ld11P009F06F121F2_028.ab1   376 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0