No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:411)  402  0.00 0.00 0.24  KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1        1   412 (142)  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1   (173)   411     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1   584 
  241    KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1    68 
  245  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1   340 
  309    KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1   136 
  369  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1   216 
  377    KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1   204 
  421  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1   164 
  457    KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1   284 
  533  C KSU044_D04_BQ168911Ld12P009F06F121R2_026.ab1    52 
  537    KSU043_D04_BQ168911Ld12P009F06F121F2_026.ab1   364 
Contig length: old 726, new 727

Contig length: old 727, new 727
New start: 0