No. words: 1132; after pruning: 1106


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:408)  399  0.00 0.00 0.24  KSU043_E04_BQ168911Ld13P009F06F121F2_024.ab1        1   409 (142)  C KSU044_E04_BQ168911Ld13P009F06F121R2_024.ab1   (173)   408     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C KSU044_E04_BQ168911Ld13P009F06F121R2_024.ab1   581 
  421    KSU043_E04_BQ168911Ld13P009F06F121F2_024.ab1   248 
Contig length: old 723, new 724

Contig length: old 724, new 724
New start: 0