No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:411)  403  0.00 0.00 0.24  KSU043_G04_BQ168911Ld15P009F06F121F2_020.ab1        1   412 (169)  C KSU044_G04_BQ168911Ld15P009F06F121R2_020.ab1   (146)   411     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C KSU044_G04_BQ168911Ld15P009F06F121R2_020.ab1   557 
  346    KSU043_G04_BQ168911Ld15P009F06F121F2_020.ab1   200 
  394  C KSU044_G04_BQ168911Ld15P009F06F121R2_020.ab1   164 
  410    KSU043_G04_BQ168911Ld15P009F06F121F2_020.ab1   264 
Contig length: old 726, new 727

Contig length: old 727, new 727
New start: 0