No. words: 1589; after pruning: 1563


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:774)  754  0.13 0.13 0.00  KSU006_E09_BQ168914As01P009G06G121F1_067.ab1        1   775 (13)  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   (25)   776     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   801 
   40    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1    14 
  268  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   534 
  272    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   246 
  284  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   518 
  292    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   266 
  320  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   482 
  328    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   302 
  336  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   466 
  340    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   314 
  356  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   446 
  360    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   334 
  384  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   418 
  404    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   378 
  412  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   390 
  432    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   406 
  444  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   358 
  448    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   422 
  456  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   346 
  460    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   434 
  476  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   326 
  508    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   482 
  512  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   290 
  520    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   494 
  524  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1   278 
  790    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   764 
  794  C KSU007_E09_BQ168914As01P009G06G121R1_067.ab1     8 
  798    KSU006_E09_BQ168914As01P009G06G121F1_067.ab1   772 
Contig length: old 814, new 814

Contig length: old 814, new 814
New start: 0