No. words: 1593; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 14.7 (1,1:763)  733  0.13 0.00 0.13  KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1       10   763 (37)  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1   (39)   754     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1   793 
  103    KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1    73 
  143  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1   651 
  151    KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1   121 
  159  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1   635 
  680    KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1   650 
  692  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1   102 
  716    KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1   686 
  752  C KSU051_G12_BQ168914As02P009G06G0121R1_084.ab1    42 
  756    KSU050_G12_BQ168914As02P009G06G0121F1_084.ab1   726 
Contig length: old 829, new 830

Contig length: old 830, new 830
New start: 0