No. words: 446; after pruning: 420


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -4.8 -4.8 (1,1:173)   87 13.38 0.00 0.64  KSU043_H05_CD453648Ld08P009H06H121F2_033.ab1        4   160 (0)  C KSU044_H05_CD453648Ld08P009H06H121R2_033.ab1   (116)   170    15 *
  Worst pair: offset 1 
LLR breakdown: discreps: -7.7 (<20 part: -7.7 (#=22), >20:0.0 (#=0); in HQ: -7.7, out HQ 0.0), match: 3.0  lead: -0.2  total: -4.9   87 13.38 0.00 0.64  KSU043_H05_CD453648Ld08P009H06H121F2_033.ab1        4   160 (0)  C KSU044_H05_CD453648Ld08P009H06H121R2_033.ab1   (116)   170    15 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.8       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  28 nodes

 16 str. conn. components

Path
    1  C KSU044_H05_CD453648Ld08P009H06H121R2_033.ab1   286 
  246    KSU043_H05_CD453648Ld08P009H06H121F2_033.ab1   134 
  256  C KSU044_H05_CD453648Ld08P009H06H121R2_033.ab1    31 
Contig length: old 286, new 286

Contig length: old 286, new 286
New start: 0 
S Change at: 123; seg lengths: entry 4, contig 4
S Change at: 135; seg lengths: entry 1, contig 1
S Change at: 143; seg lengths: entry 4, contig 4