No. words: 722; after pruning: 696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.8 (1,1:200)  191  0.00 0.50 0.00  KSU043_D06_CD453648Ld12P009H06H121F2_042.ab1        3   201 (152)  C KSU044_D06_CD453648Ld12P009H06H121R2_042.ab1   (169)   200     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1  C KSU044_D06_CD453648Ld12P009H06H121R2_042.ab1   369 
  269    KSU043_D06_CD453648Ld12P009H06H121F2_042.ab1   101 
Contig length: old 521, new 521

Contig length: old 521, new 521
New start: 0