No. words: 710; after pruning: 684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:192)  186  0.00 0.52 0.00  KSU043_G06_CD453648Ld15P009H06H121F2_036.ab1        1   193 (152)  C KSU044_G06_CD453648Ld15P009H06H121R2_036.ab1   (171)   194     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1  C KSU044_G06_CD453648Ld15P009H06H121R2_036.ab1   365 
  265    KSU043_G06_CD453648Ld15P009H06H121F2_036.ab1    93 
  297  C KSU044_G06_CD453648Ld15P009H06H121R2_036.ab1    69 
  305    KSU043_G06_CD453648Ld15P009H06H121F2_036.ab1   133 
  313  C KSU044_G06_CD453648Ld15P009H06H121R2_036.ab1    53 
  329    KSU043_G06_CD453648Ld15P009H06H121F2_036.ab1   157 
Contig length: old 517, new 517

Contig length: old 517, new 517
New start: 0