No. words: 500; after pruning: 474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.2 (1,1:193)  186  0.00 0.00 0.00  KSU050_H06_CD453648Tu02P009H06H0121F1_034.ab1        4   194 (59)  C KSU051_H06_CD453648Tu02P009H06H0121R1_034.ab1   (56)   191     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1  C KSU051_H06_CD453648Tu02P009H06H0121R1_034.ab1   247 
  128    KSU050_H06_CD453648Tu02P009H06H0121F1_034.ab1    75 
  136  C KSU051_H06_CD453648Tu02P009H06H0121R1_034.ab1   112 
  160    KSU050_H06_CD453648Tu02P009H06H0121F1_034.ab1   107 
  196  C KSU051_H06_CD453648Tu02P009H06H0121R1_034.ab1    52 
  200    KSU050_H06_CD453648Tu02P009H06H0121F1_034.ab1   147 
Contig length: old 306, new 306

Contig length: old 306, new 306
New start: 0