No. words: 1476; after pruning: 1450


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.4 (1,1:1159)  307  0.32 0.00 0.00  MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1      420   735 (0)  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   (0)   741   426 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1    MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1     1 
  583  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   578 
  587    MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1   587 
  595  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   566 
  599    MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1   599 
  619  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   542 
  623    MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1   623 
  631  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   530 
  672    MoSU003F_C05_BE352570As01P005A03A091F1_034.ab1   672 
  676  C MoSU003R_C05_BE352570As01P005A03A091R1_034.ab1   485 
Contig length: old 1160, new 1160

Contig length: old 1160, new 1160
New start: 0