No. words: 1261; after pruning: 1235


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.4 (1,1:1150)   95  0.00 0.92 0.92  MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1      482   590 (0)  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   (0)   671   563 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1     1 
  507  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   645 
  519    MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1   519 
  535  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   617 
  543    MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1   543 
  551  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   601 
  561    MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1   562 
  565  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   587 
  569    MoSU003F_D05_BE352570As02P005A03A091F1_042.ab1   570 
  577  C MoSU003R_D05_BE352570As02P005A03A091R1_042.ab1   575 
Contig length: old 1151, new 1151

Contig length: old 1151, new 1151
New start: 0