No. words: 1451; after pruning: 1411


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.4 (1,1:1151)  236  6.35 0.00 0.00  MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1      383   681 (0)  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   (0)   770   472 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1     1 
  386  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   767 
  394    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1   394 
  410  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   743 
  414    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1   414 
  422  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   731 
  430    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1   430 
  438  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   715 
  583    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1   583 
  587  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   566 
  616    MoSU003F_E05_BE352570At01P005A03A091F1_035.ab1   616 
  620  C MoSU003R_E05_BE352570At01P005A03A091R1_035.ab1   533 
Contig length: old 1152, new 1152

Contig length: old 1152, new 1152
New start: 0 
S Change at: 231; seg lengths: entry 1, contig 1