No. words: 1518; after pruning: 1492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:1219)  283  0.34 0.00 0.34  MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1      451   748 (0)  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   (0)   770   474 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1     1 
  474  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   747 
  478    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1   478 
  574  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   647 
  582    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1   582 
  586  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   635 
  602    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1   602 
  610  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   611 
  631    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1   631 
  635  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   586 
  679    MoSU003F_G05_BE352570Ld01P005A03A091F1_036.ab1   679 
  683  C MoSU003R_G05_BE352570Ld01P005A03A091R1_036.ab1   538 
Contig length: old 1220, new 1220

Contig length: old 1220, new 1221
New start: 0 
I Change at: 740; seg lengths: entry 1, contig 0