No. words: 1561; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:1222)  324  0.00 0.00 0.29  MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1      408   746 (0)  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   (0)   815   478 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1     1 
  573  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   651 
  577    MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1   577 
  581  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   643 
  585    MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1   585 
  597  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   627 
  605    MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1   605 
  613  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   611 
  629    MoSU003F_H05_BE352570Ld02P005A03A091F1_044.ab1   629 
  637  C MoSU003R_H05_BE352570Ld02P005A03A091R1_044.ab1   587 
Contig length: old 1223, new 1223

Contig length: old 1223, new 1223
New start: 0