No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:397)  394  0.00 0.25 0.00  MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1        1   398 (145)  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   (124)   399     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   523 
  257    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   132 
  261  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   263 
  277    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   152 
  289  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   235 
  297    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   172 
  321  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   203 
  333    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   208 
  337  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   187 
  361    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   236 
  421  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1   103 
  425    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   300 
  489  C MoSU005R_C10_BE352570Ld05P015G03G091R1_070.ab1    35 
  497    MoSU005F_C10_BE352570Ld05P015G03G091F1_070.ab1   372 
Contig length: old 668, new 668

Contig length: old 668, new 668
New start: 0