No. words: 1485; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:1211)  263  0.37 0.00 0.00  MoSU003F_D06_BE352570Ld06P005A03A091F1_046.ab1      443   715 (0)  C MoSU003R_D06_BE352570Ld06P005A03A091R1_046.ab1   (0)   770   498 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    MoSU003F_D06_BE352570Ld06P005A03A091F1_046.ab1     1 
  526  C MoSU003R_D06_BE352570Ld06P005A03A091R1_046.ab1   687 
  530    MoSU003F_D06_BE352570Ld06P005A03A091F1_046.ab1   530 
  558  C MoSU003R_D06_BE352570Ld06P005A03A091R1_046.ab1   655 
  582    MoSU003F_D06_BE352570Ld06P005A03A091F1_046.ab1   582 
  586  C MoSU003R_D06_BE352570Ld06P005A03A091R1_046.ab1   627 
  602    MoSU003F_D06_BE352570Ld06P005A03A091F1_046.ab1   602 
  606  C MoSU003R_D06_BE352570Ld06P005A03A091R1_046.ab1   607 
Contig length: old 1212, new 1212

Contig length: old 1212, new 1212
New start: 0