No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:1221)  177  0.53 0.00 0.00  MoSU003F_G06_BE352570Ld09P005A03A091F1_040.ab1      475   661 (0)  C MoSU003R_G06_BE352570Ld09P005A03A091R1_040.ab1   (0)   748   562 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1    MoSU003F_G06_BE352570Ld09P005A03A091F1_040.ab1     1 
  534  C MoSU003R_G06_BE352570Ld09P005A03A091R1_040.ab1   689 
  538    MoSU003F_G06_BE352570Ld09P005A03A091F1_040.ab1   538 
  550  C MoSU003R_G06_BE352570Ld09P005A03A091R1_040.ab1   673 
  554    MoSU003F_G06_BE352570Ld09P005A03A091F1_040.ab1   554 
  574  C MoSU003R_G06_BE352570Ld09P005A03A091R1_040.ab1   649 
  586    MoSU003F_G06_BE352570Ld09P005A03A091F1_040.ab1   586 
  598  C MoSU003R_G06_BE352570Ld09P005A03A091R1_040.ab1   625 
Contig length: old 1222, new 1222

Contig length: old 1222, new 1222
New start: 0