No. words: 1570; after pruning: 1544


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.1 (1,1:816)  697  0.14 0.14 0.00  MoSU017F_A05_BE352570Ta11P023C06P005A091F1_047.ab1        5   725 (0)  C MoSU017R_A05_BE352570Ta11P023C06P005A091R1_047.ab1   (31)   814    93 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C MoSU017R_A05_BE352570Ta11P023C06P005A091R1_047.ab1   845 
   42    MoSU017F_A05_BE352570Ta11P023C06P005A091F1_047.ab1    14 
  456  C MoSU017R_A05_BE352570Ta11P023C06P005A091R1_047.ab1   390 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0