No. words: 468; after pruning: 442


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 3.4 (1,1:190)  182  0.00 0.00 0.53  MoSU031F_A09_BE352570Ta17P024C07P015G091F1_079.ab1        1   188 (45)  C MoSU031R_A09_BE352570Ta17P024C07P015G091R1_079.ab1   (45)   190     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1  C MoSU031R_A09_BE352570Ta17P024C07P015G091R1_079.ab1   235 
  133    MoSU031F_A09_BE352570Ta17P024C07P015G091F1_079.ab1    88 
  161  C MoSU031R_A09_BE352570Ta17P024C07P015G091R1_079.ab1    75 
  165    MoSU031F_A09_BE352570Ta17P024C07P015G091F1_079.ab1   120 
  185  C MoSU031R_A09_BE352570Ta17P024C07P015G091R1_079.ab1    51 
  197    MoSU031F_A09_BE352570Ta17P024C07P015G091F1_079.ab1   152 
Contig length: old 277, new 278

Contig length: old 278, new 278
New start: 0