No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:606)  574  0.00 0.00 0.17  MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1        4   607 (60)  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   (61)   603     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   664 
   81    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1    23 
  105  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   560 
  109    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1    51 
  129  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   536 
  137    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1    79 
  141  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   524 
  145    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1    87 
  305  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   360 
  313    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   255 
  361  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   304 
  397    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   339 
  421  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   244 
  501    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   443 
  505  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   160 
  521    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   463 
  525  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   140 
  541    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   483 
  549  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   116 
  553    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   495 
  557  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1   108 
  573    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   515 
  581  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1    84 
  593    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   535 
  597  C MoSU017R_H08_BE352570Ta18P005A03P023B071R1_050.ab1    68 
  649    MoSU017F_H08_BE352570Ta18P005A03P023B071F1_050.ab1   591 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0