No. words: 1343; after pruning: 1317


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:638)  608  0.16 0.16 0.00  MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1        1   638 (28)  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   (38)   639     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   677 
   72    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1    33 
   76  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   602 
   80    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1    41 
   88  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   590 
   92    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1    53 
  104  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   574 
  112    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1    73 
  124  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   554 
  136    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1    97 
  140  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   538 
  144    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1   105 
  160  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   518 
  224    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1   185 
  232  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   446 
  544    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1   505 
  548  C MoSU017R_B09_BE352570Ta20P005A03P023B071R1_077.ab1   130 
  664    MoSU017F_B09_BE352570Ta20P005A03P023B071F1_077.ab1   625 
Contig length: old 704, new 705

Contig length: old 705, new 705
New start: 0