No. words: 1310; after pruning: 1284


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:609)  581  0.00 0.00 0.16  MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1        1   610 (39)  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   (52)   609     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   661 
   64    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1    12 
   68  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   594 
   76    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1    24 
   84  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   578 
   88    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1    36 
   92  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   570 
  100    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1    48 
  120  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   542 
  124    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1    72 
  172  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   490 
  176    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   124 
  272  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   390 
  284    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   232 
  296  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   366 
  316    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   264 
  372  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   290 
  528    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   476 
  540  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1   122 
  552    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   500 
  580  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1    82 
  584    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   532 
  616  C MoSU017R_C09_BE352570Ta21P005A03P023B071R1_075.ab1    46 
  620    MoSU017F_C09_BE352570Ta21P005A03P023B071F1_075.ab1   568 
Contig length: old 700, new 701

Contig length: old 701, new 701
New start: 0