No. words: 1549; after pruning: 1523


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:803)  687  0.14 0.00 0.14  MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1        1   711 (0)  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   (35)   803    94 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   838 
   48    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1    13 
   60  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   779 
   64    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1    29 
  112  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   727 
  116    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1    81 
  120  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   719 
  124    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1    89 
  132  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   707 
  136    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   101 
  176  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   663 
  184    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   149 
  196  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   643 
  204    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   169 
  208  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   631 
  248    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   213 
  252  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   587 
  280    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   245 
  288  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   551 
  312    MoSU017F_G03_BE352570Td01P023C06P005A091F1_019.ab1   277 
  320  C MoSU017R_G03_BE352570Td01P023C06P005A091R1_019.ab1   519 
Contig length: old 838, new 838

Contig length: old 838, new 838
New start: 0