No. words: 1340; after pruning: 1314


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:615)  582  0.00 0.16 0.16  MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1        1   616 (62)  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   (46)   616     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   662 
   71    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1    24 
   83  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   580 
   91    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1    44 
  103  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   560 
  111    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1    64 
  127  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   536 
  135    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1    88 
  139  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   524 
  143    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1    96 
  379  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   284 
  531    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1   484 
  547  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   116 
  555    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1   508 
  563  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1   100 
  587    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1   540 
  595  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1    68 
  639    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1   592 
  643  C MoSU017R_B07_BE352570Td04P005A03P023B071R1_061.ab1    20 
  647    MoSU017F_B07_BE352570Td04P005A03P023B071F1_061.ab1   600 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0