No. words: 458; after pruning: 432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:167)  167  0.00 0.00 0.00  MoSU031F_D07_BE352570Td04P024C07P015G091F1_057.ab1        1   168 (65)  C MoSU031R_D07_BE352570Td04P024C07P015G091R1_057.ab1   (57)   168     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1  C MoSU031R_D07_BE352570Td04P024C07P015G091R1_057.ab1   225 
  101    MoSU031F_D07_BE352570Td04P024C07P015G091F1_057.ab1    44 
  137  C MoSU031R_D07_BE352570Td04P024C07P015G091R1_057.ab1    89 
  149    MoSU031F_D07_BE352570Td04P024C07P015G091F1_057.ab1    92 
  157  C MoSU031R_D07_BE352570Td04P024C07P015G091R1_057.ab1    69 
  173    MoSU031F_D07_BE352570Td04P024C07P015G091F1_057.ab1   116 
Contig length: old 290, new 290

Contig length: old 290, new 290
New start: 0