No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:623)  586  0.32 0.16 0.16  MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1        1   624 (33)  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   (52)   624     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   676 
   91    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1    38 
  107  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   570 
  111    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1    58 
  175  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   502 
  251    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1   198 
  407  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   270 
  523    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1   470 
  575  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1   102 
  611    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1   558 
  623  C MoSU017R_C07_BE352570Td05P005A03P023B071R1_059.ab1    54 
  639    MoSU017F_C07_BE352570Td05P005A03P023B071F1_059.ab1   586 
Contig length: old 709, new 710

Contig length: old 710, new 710
New start: 0