No. words: 1397; after pruning: 1357


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.0 (1,1:804)  531  0.18 0.00 0.18  MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1        4   557 (0)  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   (39)   801   249 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   840 
   43    MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1     7 
   47  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   794 
   51    MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1    15 
  199  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   643 
  203    MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1   167 
  247  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   595 
  251    MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1   215 
  335  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   507 
  339    MoSU017F_H04_BE352570Td10P023C06P005A091F1_018.ab1   303 
  343  C MoSU017R_H04_BE352570Td10P023C06P005A091R1_018.ab1   499 
Contig length: old 840, new 841

Contig length: old 841, new 840
New start: 0 
D Change at: 79; seg lengths: entry 0, contig 1