No. words: 1319; after pruning: 1293


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:498)  484  0.00 0.20 0.40  MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1        1   500 (163)  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   (157)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   656 
  178    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1    20 
  182  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   475 
  198    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1    40 
  206  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   451 
  222    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1    64 
  242  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   415 
  322    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1   164 
  442  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   215 
  446    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1   288 
  478  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1   179 
  502    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1   344 
  622  C MoSU010R_H09_BE404240Ld02P018C03P018C091R1_065.ab1    35 
  630    MoSU010F_H09_BE404240Ld02P018C03P018C091F1_065.ab1   472 
Contig length: old 820, new 821

Contig length: old 821, new 821
New start: 0