No. words: 1305; after pruning: 1279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:492)  492  0.00 0.00 0.00  MoSU010F_B10_BE404240Ld04P018C03P018C091F1_078.ab1        1   493 (153)  C MoSU010R_B10_BE404240Ld04P018C03P018C091R1_078.ab1   (166)   493     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1  C MoSU010R_B10_BE404240Ld04P018C03P018C091R1_078.ab1   659 
  282    MoSU010F_B10_BE404240Ld04P018C03P018C091F1_078.ab1   116 
  310  C MoSU010R_B10_BE404240Ld04P018C03P018C091R1_078.ab1   350 
  358    MoSU010F_B10_BE404240Ld04P018C03P018C091F1_078.ab1   192 
  490  C MoSU010R_B10_BE404240Ld04P018C03P018C091R1_078.ab1   170 
  494    MoSU010F_B10_BE404240Ld04P018C03P018C091F1_078.ab1   328 
  538  C MoSU010R_B10_BE404240Ld04P018C03P018C091R1_078.ab1   122 
  578    MoSU010F_B10_BE404240Ld04P018C03P018C091F1_078.ab1   412 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0