No. words: 1323; after pruning: 1297


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:499)  490  0.00 0.20 0.20  MoSU010F_E10_BE404240Ld07P018C03P018C091F1_072.ab1        1   500 (167)  C MoSU010R_E10_BE404240Ld07P018C03P018C091R1_072.ab1   (156)   500     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU010R_E10_BE404240Ld07P018C03P018C091R1_072.ab1   656 
  237    MoSU010F_E10_BE404240Ld07P018C03P018C091F1_072.ab1    80 
  241  C MoSU010R_E10_BE404240Ld07P018C03P018C091R1_072.ab1   416 
  349    MoSU010F_E10_BE404240Ld07P018C03P018C091F1_072.ab1   192 
  477  C MoSU010R_E10_BE404240Ld07P018C03P018C091R1_072.ab1   180 
  501    MoSU010F_E10_BE404240Ld07P018C03P018C091F1_072.ab1   344 
  541  C MoSU010R_E10_BE404240Ld07P018C03P018C091R1_072.ab1   116 
  549    MoSU010F_E10_BE404240Ld07P018C03P018C091F1_072.ab1   392 
Contig length: old 823, new 824

Contig length: old 824, new 824
New start: 0