No. words: 1079; after pruning: 1053


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:486)  476  0.41 0.21 0.00  MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1        1   487 (50)  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   (54)   488     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   542 
   66    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1    11 
   74  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   469 
   82    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1    27 
   94  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   449 
  106    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1    51 
  130  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   413 
  138    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1    83 
  146  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   397 
  150    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1    95 
  194  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   349 
  198    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   143 
  258  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   285 
  262    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   207 
  266  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   277 
  270    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   215 
  274  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   269 
  323    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   268 
  347  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   196 
  351    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   296 
  375  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   168 
  387    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   332 
  403  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   140 
  411    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   356 
  415  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   128 
  427    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   372 
  431  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1   112 
  439    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   384 
  475  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1    68 
  483    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   428 
  532  C MoSU010R_A09_BE404240Tu01P018C03P018C091R1_079.ab1    11 
  536    MoSU010F_A09_BE404240Tu01P018C03P018C091F1_079.ab1   481 
Contig length: old 592, new 592

Contig length: old 592, new 592
New start: 0