No. words: 537; after pruning: 511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 2.7 (1,1:224)  207  0.00 0.45 0.45  MoSU016F_C01_BE405835Td03P023G03P005D091F1_011.ab1        1   220 (47)  C MoSU016R_C01_BE405835Td03P023G03P005D091R1_011.ab1   (45)   225     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1  C MoSU016R_C01_BE405835Td03P023G03P005D091R1_011.ab1   270 
  110    MoSU016F_C01_BE405835Td03P023G03P005D091F1_011.ab1    64 
  130  C MoSU016R_C01_BE405835Td03P023G03P005D091R1_011.ab1   141 
  142    MoSU016F_C01_BE405835Td03P023G03P005D091F1_011.ab1    96 
  170  C MoSU016R_C01_BE405835Td03P023G03P005D091R1_011.ab1   101 
  174    MoSU016F_C01_BE405835Td03P023G03P005D091F1_011.ab1   128 
  186  C MoSU016R_C01_BE405835Td03P023G03P005D091R1_011.ab1    85 
  206    MoSU016F_C01_BE405835Td03P023G03P005D091F1_011.ab1   160 
Contig length: old 312, new 313

Contig length: old 313, new 313
New start: 0