No. words: 537; after pruning: 511


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:217)  209  0.00 0.46 0.00  MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1        1   218 (60)  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   (40)   219     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   259 
   87    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1    46 
   91  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   169 
   95    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1    54 
   99  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   161 
  111    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1    70 
  131  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   129 
  147    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1   106 
  155  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1   105 
  163    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1   122 
  191  C MoSU016R_B02_BE405835Td10P023G03P005D091R1_014.ab1    69 
  211    MoSU016F_B02_BE405835Td10P023G03P005D091F1_014.ab1   170 
Contig length: old 319, new 319

Contig length: old 319, new 319
New start: 0